SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus DEvelopment stage (XDE): NF stage 35 and 36

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   embryonic stage [XAO:1000012] <6>(41|60) (43|44|18)
+ + 2:   tailbud stage [XAO:1000007] <2>(19|17) (19|16|6)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ 1:   NF stage [XAO:1000094] <68>(436|583) (436|330|141)
+ 1:   late tailbud stage [XAO:1000080] <12>(15|14) (15|11|4)
0:   NF stage 35 and 36 [XAO:1000049](7|5) (7|2|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Neurotransmitter-gated ion-channel transmembrane pore0.0000137Direct
Nicotinic receptor ligand binding domain-like0.0000137Direct
Periplasmic binding protein-like I0.00002156Direct
Cadherin-like0.000433Direct
EGF/Laminin0.0005667Direct
Periplasmic binding protein-like II0.0005994Direct
SpoIIaa-like0.0009378Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
L-arabinose binding protein-like0.000005531Direct
Neurotransmitter-gated ion-channel transmembrane pore0.000009055Direct
Nicotinic receptor ligand binding domain-like0.000009055Direct
Phosphate binding protein-like0.00009112Direct
Cadherin0.0002393Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0.000009067Direct
Neurotransmitter-gated ion-channel transmembrane pore0.000009067Direct
Periplasmic binding protein-like I0.00001429Direct
Cadherin-like0.0002918Direct
EGF/Laminin0.0003841Direct
Periplasmic binding protein-like II0.0004073Direct
SpoIIaa-like0.0006411Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.000009067Direct
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.000203Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0008808Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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