Family Assignments

Domains Proteins SCOP Link Families
41 41 SCOP 58105 Methyl-accepting chemotaxis protein (MCP) signaling domain
30 30 SCOP 53851 Phosphate binding protein-like
28 28 SCOP 52686 ABC transporter ATPase domain-like
14 11 SCOP 48404 Ankyrin repeat
12 7 SCOP 81268 Tandem AAA-ATPase domain
12 10 SCOP 81269 Extended AAA-ATPase domain
11 11 SCOP 51751 Tyrosine-dependent oxidoreductases
8 8 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
8 8 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
7 7 SCOP 51431 Aldo-keto reductases (NADP)
7 7 SCOP 53384 AAT-like
6 6 SCOP 51570 Class I aldolase
6 6 SCOP 52592 G proteins
6 6 SCOP 53417 GABA-aminotransferase-like
6 3 SCOP 53902 Thiolase-related
5 5 SCOP 52652 Nitrogenase iron protein-like
5 5 SCOP 52670 RecA protein-like (ATPase-domain)
5 5 SCOP 53204 Bacterial dinuclear zinc exopeptidases
5 5 SCOP 53272 Phosphoribosyltransferases (PRTases)
5 5 SCOP 53614 Ribokinase-like
5 5 SCOP 161071 SNF-like
4 4 SCOP 50282 Cold shock DNA-binding domain-like
4 4 SCOP 51396 FMN-linked oxidoreductases
4 4 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
4 2 SCOP 53068 Actin/HSP70
4 4 SCOP 53168 Purine and uridine phosphorylases
4 4 SCOP 53402 Cystathionine synthase-like
4 4 SCOP 53823 L-arabinose binding protein-like
4 4 SCOP 55921 Creatinase/aminopeptidase
4 4 SCOP 69892 Iron-containing alcohol dehydrogenase
4 4 SCOP 82867 Multidrug efflux transporter AcrB transmembrane domain
4 4 SCOP 118216 Proton glutamate symport protein
3 3 SCOP 47241 Ferritin
3 3 SCOP 50448 Elongation factors
3 3 SCOP 50678 ValRS/IleRS/LeuRS editing domain
3 3 SCOP 51262 Glucose permease-like
3 3 SCOP 51599 Class I DAHP synthetase
3 3 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
3 3 SCOP 52318 Class I glutamine amidotransferases (GAT)
3 2 SCOP 52441 BC N-terminal domain-like
3 3 SCOP 52541 Nucleotide and nucleoside kinases
3 3 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
3 3 SCOP 54212 Translational machinery components
3 3 SCOP 55348 GAPDH-like
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 2 SCOP 56067 BC ATP-binding domain-like
3 3 SCOP 64519 Phase 1 flagellin
3 3 SCOP 142721 PyrH-like
3 3 SCOP 159832 PBP transglycosylase domain-like
2 2 SCOP 47204 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 48558 L-aspartase/fumarase
2 2 SCOP 50136 Alcohol dehydrogenase-like, N-terminal domain
2 2 SCOP 51183 dTDP-sugar isomerase
2 2 SCOP 51367 Histidine biosynthesis enzymes
2 2 SCOP 51420 Alanine racemase-like, N-terminal domain
2 2 SCOP 51591 Class II FBP aldolase
2 2 SCOP 51736 Alcohol dehydrogenase-like, C-terminal domain
2 2 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
2 2 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
2 2 SCOP 52397 Adenylyltransferase
2 2 SCOP 52403 N-type ATP pyrophosphatases
2 2 SCOP 52513 NagB-like
2 2 SCOP 52739 Methylesterase CheB, C-terminal domain
2 2 SCOP 52901 Glutathione peroxidase-like
2 1 SCOP 53080 Acetokinase-like
2 1 SCOP 53089 Glycerol kinase
2 2 SCOP 53099 Ribonuclease H
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53179 Peptidyl-tRNA hydrolase-like
2 2 SCOP 53329 Formyltransferase
2 2 SCOP 53357 Chemotaxis receptor methyltransferase CheR, C-terminal domain
2 2 SCOP 53464 glucose-1-phosphate thymidylyltransferase
2 2 SCOP 53620 Thiamin biosynthesis kinases
2 2 SCOP 53672 Aspartate/ornithine carbamoyltransferase
2 2 SCOP 53721 ALDH-like
2 2 SCOP 53914 Chalcone synthase-like
2 2 SCOP 53921 Fe-only hydrogenase
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 54632 CBS-domain pair
2 2 SCOP 55209 Enolpyruvate transferase, EPT
2 2 SCOP 55327 PurM N-terminal domain-like
2 2 SCOP 55730 N-acetyl transferase, NAT
2 2 SCOP 55879 DNA gyrase/MutL, N-terminal domain
2 2 SCOP 55884 Histidine kinase
2 2 SCOP 56004 Molybdenum cofactor-binding domain
2 2 SCOP 56043 PurM C-terminal domain-like
2 2 SCOP 56236 Class II glutamine amidotransferases
2 2 SCOP 56646 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
2 2 SCOP 56802 Acetyl-CoA synthetase-like
2 2 SCOP 64411 APH phosphotransferases
2 2 SCOP 68901 Cytidylytransferase
2 1 SCOP 74656 CoA transferase alpha subunit-like
2 2 SCOP 74911 Aldose 1-epimerase (mutarotase)
2 2 SCOP 75073 Hydantoinase (dihydropyrimidinase), catalytic domain
2 2 SCOP 75621 Release factor
2 2 SCOP 82388 Predicted hydrolases Cof
2 2 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
2 1 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 89863 PhzC/PhzF-like
2 2 SCOP 101802 Surface presentation of antigens (SPOA)
2 2 SCOP 110513 IF2B-like
2 2 SCOP 110734 Glycosyl transferases group 1
2 2 SCOP 111039 YjbQ-like
2 2 SCOP 111219 ArgJ-like
2 2 SCOP 111284 Putative modulator of DNA gyrase, PmbA/TldD
2 2 SCOP 159112 RNB domain-like
2 2 SCOP 161094 MgtE membrane domain-like
1 1 SCOP 46566 Chaperone J-domain
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48030 FliG
1 1 SCOP 48109 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 SCOP 48184 Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
1 1 SCOP 48222 N-acylglucosamine (NAG) epimerase
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48580 Squalene synthase
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 49803 beta-Galactosidase/glucuronidase, N-terminal domain
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50250 Anticodon-binding domain
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 50716 Ribosomal protein L25-like
1 1 SCOP 51162 UDP N-acetylglucosamine acyltransferase
1 1 SCOP 51171 GlmU C-terminal domain-like
1 1 SCOP 51191 Type I phosphomannose isomerase
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51375 Decarboxylase
1 1 SCOP 51392 Thiamin phosphate synthase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51446 Amylase, catalytic domain
1 1 SCOP 51487 beta-glycanases
1 1 SCOP 51521 Family 1 of glycosyl hydrolase
1 1 SCOP 51553 NagZ-like
1 1 SCOP 51605 Enolase
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51629 Pyruvate phosphate dikinase, C-terminal domain
1 1 SCOP 51638 HpcH/HpaI aldolase
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52010 Pyruvate phosphate dikinase, central domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52022 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52103 Crotonase-like
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52147 Mug-like
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52173 CheY-related
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52432 ETFP subunits
1 1 SCOP 52471 C-terminal domain of the electron transfer flavoprotein alpha subunit
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52729 PTS IIb component
1 1 SCOP 52778 CAT-like
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 53183 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 SCOP 53201 Leucine aminopeptidase, C-terminal domain
1 1 SCOP 53224 Aminoacid dehydrogenases
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53245 MurCDEF C-terminal domain
1 1 SCOP 53255 Cofactor-dependent phosphoglycerate mutase
1 1 SCOP 53377 Type II DNA methylase
1 1 SCOP 53397 Beta-eliminating lyases
1 1 SCOP 53461 UDP-glucose pyrophosphorylase
1 1 SCOP 53624 MurCDEF
1 1 SCOP 53629 Folylpolyglutamate synthetase
1 1 SCOP 53634 Carbamate kinase
1 1 SCOP 53640 AraD-like aldolase/epimerase
1 1 SCOP 53650 Alkaline phosphatase
1 1 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53733 Aconitase iron-sulfur domain
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53760 Peptidoglycan biosynthesis glycosyltransferase MurG
1 1 SCOP 53785 Phosphofructokinase
1 1 SCOP 53796 PEP carboxykinase C-terminal domain
1 1 SCOP 53801 Ferrochelatase
1 1 SCOP 53811 TroA-like
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54232 GHMP Kinase, N-terminal domain
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54981 EF-G/eEF-2 domains III and V
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55041 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 SCOP 55069 Peptide methionine sulfoxide reductase
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55299 YjgF/L-PSP
1 1 SCOP 55368 Dihydrodipicolinate reductase-like
1 1 SCOP 55832 Thymidylate synthase/dCMP hydroxymethylase
1 1 SCOP 55847 N-acetylmuramoyl-L-alanine amidase-like
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 56038 B3/B4 domain of PheRS, PheT
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56085 Pyruvate phosphate dikinase, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56105 SAICAR synthase
1 1 SCOP 56220 DNase I-like
1 1 SCOP 56251 Proteasome subunits
1 1 SCOP 56291 ROO N-terminal domain-like
1 1 SCOP 56328 Lactate & malate dehydrogenases, C-terminal domain
1 1 SCOP 56350 Lambda integrase-like, catalytic core
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56530 FAH
1 1 SCOP 56554 Insert subdomain of RNA polymerase alpha subunit
1 1 SCOP 56602 beta-Lactamase/D-ala carboxypeptidase
1 1 SCOP 56635 Heme-dependent catalases
1 1 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56895 Aquaporin-like
1 1 SCOP 57939 DnaJ/Hsp40 cysteine-rich domain
1 1 SCOP 63412 MPP-like
1 1 SCOP 63971 Inosicase
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 63993 Dipeptide transport protein
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64089 BadF/BadG/BcrA/BcrD-like
1 1 SCOP 64186 HPr kinase HprK C-terminal domain
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 64511 Phosphoserine phosphatase
1 1 SCOP 68924 PEP carboxykinase N-terminal domain
1 1 SCOP 69066 RNase III catalytic domain-like
1 1 SCOP 69599 mono-SIS domain
1 1 SCOP 69602 L-histidinol dehydrogenase HisD
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69766 IpsF-like
1 1 SCOP 69865 Argininosuccinate synthetase, C-terminal domain
1 1 SCOP 69912 Clc chloride channel
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74756 3-Methyladenine DNA glycosylase I (Tag)
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75079 Renal dipeptidase
1 1 SCOP 75082 Uronate isomerase-like
1 1 SCOP 75297 N-acetyl-l-glutamate kinase
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75459 Pseudouridine synthase RsuA/RluD
1 1 SCOP 75626 YebC-like
1 1 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 SCOP 81656 Meta-cation ATPase, catalytic domain P
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82258 SAH/MTA deaminase-like
1 1 SCOP 82261 N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82283 Homocysteine S-methyltransferase
1 1 SCOP 82336 Shikimate dehydrogenase-like
1 1 SCOP 82504 Acetyl xylan esterase-like
1 1 SCOP 82661 Poly A polymerase head domain-like
1 1 SCOP 88682 Alanine racemase
1 1 SCOP 88683 Eukaryotic ODC-like
1 1 SCOP 88724 Pyruvate oxidase and decarboxylase Pyr module
1 1 SCOP 88749 Pyruvate oxidase and decarboxylase PP module
1 1 SCOP 89494 HMGL-like
1 1 SCOP 89551 PHP domain
1 1 SCOP 89554 4-alpha-glucanotransferase, N-terminal domain
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89734 L-sulfolactate dehydrogenase-like
1 1 SCOP 89800 Deoxycytidylate deaminase-like
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 101086 AmyC C-terminal domain-like
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101474 DhaL-like
1 1 SCOP 101884 Glycosyl hydrolases family 32 N-terminal domain
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 102115 Biotin synthase
1 1 SCOP 102189 AmyC N-terminal domain-like
1 1 SCOP 102406 MoCo carrier protein-like
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102660 PlsX-like
1 1 SCOP 102663 Phosphotransacetylase
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102928 NifU/IscU domain
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 109613 DAK1
1 1 SCOP 109756 PhoU-like
1 1 SCOP 109965 BC3264-like
1 1 SCOP 110354 Outer surface protein, N-terminal domain
1 1 SCOP 110368 NeuB-like
1 1 SCOP 110377 UxuA-like
1 1 SCOP 110388 MoCo biosynthesis proteins
1 1 SCOP 110396 CutC-like
1 1 SCOP 110582 Indigoidine synthase A-like
1 1 SCOP 110739 Glycerate kinase I
1 1 SCOP 110910 Monomeric nicotinate phosphoribosyltransferase C-terminal domain
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111338 QueA-like
1 1 SCOP 117144 Flagellar hook protein flgE
1 1 SCOP 117458 FumA C-terminal domain-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 117984 GGDEF domain
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 142020 Nqo1 FMN-binding domain-like
1 1 SCOP 142434 CinA-like
1 1 SCOP 142635 hypothetical RNA methyltransferase
1 1 SCOP 142696 RibA-like
1 1 SCOP 142701 RibD C-terminal domain-like
1 1 SCOP 142735 DeoB catalytic domain-like
1 1 SCOP 143473 UTRA domain
1 1 SCOP 143598 YojJ-like
1 1 SCOP 143632 ApbE-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143857 DeoB insert domain-like
1 1 SCOP 143906 Gamma-glutamyltranspeptidase-like
1 1 SCOP 143976 lvD/EDD N-terminal domain-like
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 159400 Imidazolonepropionase-like
1 1 SCOP 159584 PTS system, Fructose specific IIB subunit-like
1 1 SCOP 159720 mannose-1-phosphate guanylyl transferase
1 1 SCOP 159756 O-acetyltransferase
1 1 SCOP 160260 GrpB-like
1 1 SCOP 160644 EF1021-like
1 1 SCOP 160861 Alkylsulfatase-like
1 1 SCOP 161099 MetI-like

The following families have one or more weak hits: