Family Assignments

Domains Proteins SCOP Link Families
45 45 SCOP 52686 ABC transporter ATPase domain-like
19 19 SCOP 58105 Methyl-accepting chemotaxis protein (MCP) signaling domain
12 12 SCOP 53851 Phosphate binding protein-like
12 7 SCOP 81268 Tandem AAA-ATPase domain
12 10 SCOP 81269 Extended AAA-ATPase domain
12 12 SCOP 161099 MetI-like
11 10 SCOP 52592 G proteins
10 10 SCOP 51751 Tyrosine-dependent oxidoreductases
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
10 10 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
9 9 SCOP 51446 Amylase, catalytic domain
8 8 SCOP 52670 RecA protein-like (ATPase-domain)
7 7 SCOP 52652 Nitrogenase iron protein-like
7 7 SCOP 53204 Bacterial dinuclear zinc exopeptidases
6 3 SCOP 53068 Actin/HSP70
6 3 SCOP 53080 Acetokinase-like
6 6 SCOP 53417 GABA-aminotransferase-like
5 5 SCOP 50282 Cold shock DNA-binding domain-like
5 5 SCOP 53823 L-arabinose binding protein-like
5 5 SCOP 90124 ABC transporter transmembrane region
4 4 SCOP 51396 FMN-linked oxidoreductases
4 4 SCOP 53272 Phosphoribosyltransferases (PRTases)
4 4 SCOP 53384 AAT-like
4 4 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
4 2 SCOP 53902 Thiolase-related
4 4 SCOP 82550 DegV-like
3 3 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
3 3 SCOP 50448 Elongation factors
3 3 SCOP 50678 ValRS/IleRS/LeuRS editing domain
3 3 SCOP 51420 Alanine racemase-like, N-terminal domain
3 3 SCOP 51521 Family 1 of glycosyl hydrolase
3 3 SCOP 51570 Class I aldolase
3 3 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
3 3 SCOP 52318 Class I glutamine amidotransferases (GAT)
3 3 SCOP 52541 Nucleotide and nucleoside kinases
3 3 SCOP 53168 Purine and uridine phosphorylases
3 3 SCOP 53402 Cystathionine synthase-like
3 3 SCOP 53464 glucose-1-phosphate thymidylyltransferase
3 3 SCOP 53614 Ribokinase-like
3 3 SCOP 53672 Aspartate/ornithine carbamoyltransferase
3 3 SCOP 53785 Phosphofructokinase
3 3 SCOP 54212 Translational machinery components
3 3 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 56004 Molybdenum cofactor-binding domain
3 3 SCOP 64519 Phase 1 flagellin
3 3 SCOP 101340 HD domain
3 3 SCOP 117984 GGDEF domain
2 2 SCOP 47241 Ferritin
2 2 SCOP 47385 Homodimeric domain of signal transducing histidine kinase
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 48558 L-aspartase/fumarase
2 2 SCOP 50342 CheW-like
2 2 SCOP 51012 alpha-Amylases, C-terminal beta-sheet domain
2 2 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
2 2 SCOP 52173 CheY-related
2 2 SCOP 52211 Succinyl-CoA synthetase domains
2 2 SCOP 52243 Cobalamin (vitamin B12)-binding domain
2 2 SCOP 52403 N-type ATP pyrophosphatases
2 2 SCOP 52773 Histone deacetylase, HDAC
2 1 SCOP 53089 Glycerol kinase
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53147 MTH1175-like
2 2 SCOP 53329 Formyltransferase
2 2 SCOP 53698 double-SIS domain
2 2 SCOP 53763 UDP-N-acetylglucosamine 2-epimerase
2 2 SCOP 53921 Fe-only hydrogenase
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 54232 GHMP Kinase, N-terminal domain
2 2 SCOP 54666 CO dehydrogenase molybdoprotein N-domain-like
2 2 SCOP 55209 Enolpyruvate transferase, EPT
2 2 SCOP 55299 YjgF/L-PSP
2 2 SCOP 55327 PurM N-terminal domain-like
2 2 SCOP 55348 GAPDH-like
2 2 SCOP 55368 Dihydrodipicolinate reductase-like
2 2 SCOP 55425 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 SCOP 55879 DNA gyrase/MutL, N-terminal domain
2 2 SCOP 55884 Histidine kinase
2 2 SCOP 55921 Creatinase/aminopeptidase
2 2 SCOP 55932 Glutamine synthetase catalytic domain
2 2 SCOP 56043 PurM C-terminal domain-like
2 2 SCOP 56236 Class II glutamine amidotransferases
2 2 SCOP 56673 DNA polymerase I
2 2 SCOP 69892 Iron-containing alcohol dehydrogenase
2 2 SCOP 75073 Hydantoinase (dihydropyrimidinase), catalytic domain
2 2 SCOP 75459 Pseudouridine synthase RsuA/RluD
2 2 SCOP 75621 Release factor
2 2 SCOP 82258 SAH/MTA deaminase-like
2 1 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 111039 YjbQ-like
2 2 SCOP 111284 Putative modulator of DNA gyrase, PmbA/TldD
2 2 SCOP 117372 YicI catalytic domain-like
2 2 SCOP 117392 D-lysine 5,6-aminomutase alpha subunit, KamD
2 2 SCOP 141796 TM1410-like
2 2 SCOP 142020 Nqo1 FMN-binding domain-like
2 2 SCOP 142635 hypothetical RNA methyltransferase
2 2 SCOP 142678 Glycine dehydrogenase subunits (GDC-P)
2 2 SCOP 142721 PyrH-like
1 1 SCOP 46907 Ribosomal protein L11, C-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 47730 Prokaryotic DNA-bending protein
1 1 SCOP 47786 NAD+-dependent DNA ligase, domain 3
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48030 FliG
1 1 SCOP 48151 Endonuclease III
1 1 SCOP 48197 Glycerol-3-phosphate dehydrogenase
1 1 SCOP 48257 Citrate synthase
1 1 SCOP 48311 Aldehyde ferredoxin oxidoreductase, C-terminal domains
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 49368 Superoxide reductase-like
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50277 Myf domain
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 51171 GlmU C-terminal domain-like
1 1 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51375 Decarboxylase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51431 Aldo-keto reductases (NADP)
1 1 SCOP 51553 NagZ-like
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51599 Class I DAHP synthetase
1 1 SCOP 51605 Enolase
1 1 SCOP 51609 D-glucarate dehydratase-like
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51629 Pyruvate phosphate dikinase, C-terminal domain
1 1 SCOP 51659 Endonuclease IV
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51704 Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51723 Methyltetrahydrofolate-utiluzing methyltransferases
1 1 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
1 1 SCOP 51900 CoA-binding domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52147 Mug-like
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52300 S-adenosylhomocystein hydrolase
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52339 Methylglyoxal synthase, MgsA
1 1 SCOP 52394 Cytidylyltransferase
1 1 SCOP 52397 Adenylyltransferase
1 1 SCOP 52419 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 SCOP 52441 BC N-terminal domain-like
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52513 NagB-like
1 1 SCOP 52584 Phosphoribulokinase/pantothenate kinase
1 1 SCOP 52739 Methylesterase CheB, C-terminal domain
1 1 SCOP 52901 Glutathione peroxidase-like
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 52955 Anticodon-binding domain of Class II aaRS
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 52976 Maf-like
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53099 Ribonuclease H
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53183 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 SCOP 53219 MogA-like
1 1 SCOP 53224 Aminoacid dehydrogenases
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53461 UDP-glucose pyrophosphorylase
1 1 SCOP 53591 Nucleoside hydrolase
1 1 SCOP 53624 MurCDEF
1 1 SCOP 53629 Folylpolyglutamate synthetase
1 1 SCOP 53634 Carbamate kinase
1 1 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53721 ALDH-like
1 1 SCOP 53733 Aconitase iron-sulfur domain
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53775 Glutaminase/Asparaginase
1 1 SCOP 53811 TroA-like
1 1 SCOP 53928 Cytidine deaminase
1 1 SCOP 54207 Hexose-1-phosphate uridylyltransferase
1 1 SCOP 54220 RNase P protein
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54535 FKBP immunophilin/proline isomerase
1 1 SCOP 54566 Ribosomal protein S16
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54632 CBS-domain pair
1 1 SCOP 54714 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 SCOP 54737 Ribosomal protein L7/12, C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54844 Ribosomal protein L22
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 54981 EF-G/eEF-2 domains III and V
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55032 Bacterial exopeptidase dimerisation domain
1 1 SCOP 55041 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 SCOP 55069 Peptide methionine sulfoxide reductase
1 1 SCOP 55074 Adenylyl and guanylyl cyclase catalytic domain
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55505 Neurolysin-like
1 1 SCOP 55667 Ribonuclease PH domain 2-like
1 1 SCOP 55782 GAF domain
1 1 SCOP 55817 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
1 1 SCOP 55822 YrdC-like
1 1 SCOP 56038 B3/B4 domain of PheRS, PheT
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56067 BC ATP-binding domain-like
1 1 SCOP 56085 Pyruvate phosphate dikinase, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56105 SAICAR synthase
1 1 SCOP 56184 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
1 1 SCOP 56195 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 SCOP 56220 DNase I-like
1 1 SCOP 56229 Aldehyde ferredoxin oxidoreductase, N-terminal domain
1 1 SCOP 56251 Proteasome subunits
1 1 SCOP 56291 ROO N-terminal domain-like
1 1 SCOP 56307 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56822 Hybrid cluster protein (prismane protein)
1 1 SCOP 63379 MarR-like transcriptional regulators
1 1 SCOP 63883 MoeA N-terminal region -like
1 1 SCOP 63971 Inosicase
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63993 Dipeptide transport protein
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64154 YjeF N-terminal domain-like
1 1 SCOP 64168 SurE-like
1 1 SCOP 64183 Manganese-dependent inorganic pyrophosphatase (family II)
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 64433 Carbamilase
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 68901 Cytidylytransferase
1 1 SCOP 69066 RNase III catalytic domain-like
1 1 SCOP 69259 RecG "wedge" domain
1 1 SCOP 69501 DTD-like
1 1 SCOP 69557 Spermidine synthase
1 1 SCOP 69599 mono-SIS domain
1 1 SCOP 69706 Transcription factor NusA, N-terminal domain
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69766 IpsF-like
1 1 SCOP 69797 Thymidylate synthase-complementing protein Thy1
1 1 SCOP 74656 CoA transferase alpha subunit-like
1 1 SCOP 74657 CoA transferase beta subunit-like
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75079 Renal dipeptidase
1 1 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
1 1 SCOP 75292 YjeF C-terminal domain-like
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75554 Smc hinge domain
1 1 SCOP 75626 YebC-like
1 1 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 81800 Putative methyltransferase TM0872, insert domain
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82261 N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82283 Homocysteine S-methyltransferase
1 1 SCOP 82359 PP-loop ATPase
1 1 SCOP 82388 Predicted hydrolases Cof
1 1 SCOP 82475 MraW-like putative methyltransferases
1 1 SCOP 82545 GckA/TtuD-like
1 1 SCOP 88665 Sigma4 domain
1 1 SCOP 88682 Alanine racemase
1 1 SCOP 88683 Eukaryotic ODC-like
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88784 rRNA adenine dimethylase-like
1 1 SCOP 88852 SirA-like
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89032 Cobalamin adenosyltransferase
1 1 SCOP 89096 GatB/YqeY domain
1 1 SCOP 89494 HMGL-like
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89508 Glycerophosphoryl diester phosphodiesterase
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89724 Macro domain
1 1 SCOP 89800 Deoxycytidylate deaminase-like
1 1 SCOP 90027 YhfA-like
1 1 SCOP 90087 GlpX-like bacterial fructose-1,6-bisphosphatase
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 100948 Isochorismatase-like hydrolases
1 1 SCOP 101263 Methenyltetrahydrofolate cyclohydrolase-like
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101479 ADP-ribosylglycohydrolase
1 1 SCOP 101802 Surface presentation of antigens (SPOA)
1 1 SCOP 101822 Aminopeptidase/glucanase lid domain
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 101995 PA3696/SPS0176-like
1 1 SCOP 102189 AmyC N-terminal domain-like
1 1 SCOP 102406 MoCo carrier protein-like
1 1 SCOP 102575 NOL1/NOP2/sun
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102660 PlsX-like
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102928 NifU/IscU domain
1 1 SCOP 102945 RelA/SpoT domain
1 1 SCOP 103026 Aminomethyltransferase folate-binding domain
1 1 SCOP 103040 CheC-like
1 1 SCOP 103166 Ta1353-like
1 1 SCOP 103232 Arginine deiminase
1 1 SCOP 103257 Hypothetical protein TM0160
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 103366 Hypothetical protein PH1602
1 1 SCOP 109725 Conserved carboxylase domain
1 1 SCOP 109756 PhoU-like
1 1 SCOP 110284 TM1225-like predicted glycosylases
1 1 SCOP 110388 MoCo biosynthesis proteins
1 1 SCOP 110400 ThiG-like
1 1 SCOP 110513 IF2B-like
1 1 SCOP 110520 Methenyltetrahydrofolate synthetase
1 1 SCOP 110582 Indigoidine synthase A-like
1 1 SCOP 110734 Glycosyl transferases group 1
1 1 SCOP 110902 FabZ-like
1 1 SCOP 111127 H-NOX domain
1 1 SCOP 111222 Bacterial S-adenosylmethionine decarboxylase
1 1 SCOP 111238 YfiH-like
1 1 SCOP 111322 AF1104-like
1 1 SCOP 111332 NAD kinase-like
1 1 SCOP 111338 QueA-like
1 1 SCOP 117139 YicI N-terminal domain-like
1 1 SCOP 117558 Type II thymidine kinase
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 117922 PaaD-like
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141092 Ribosomal protein L21p
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 141755 PdxS-like
1 1 SCOP 142093 ThiI-like
1 1 SCOP 142434 CinA-like
1 1 SCOP 142484 CoaX-like
1 1 SCOP 142696 RibA-like
1 1 SCOP 142701 RibD C-terminal domain-like
1 1 SCOP 142755 NadA-like
1 1 SCOP 143632 ApbE-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143916 RNase Z-like
1 1 SCOP 143930 TM0894-like
1 1 SCOP 144028 Nqo4-like
1 1 SCOP 144053 Thermophilic metalloprotease (M29)
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 158833 Tex N-terminal region-like
1 1 SCOP 158932 PUD-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 159436 HI0933 N-terminal domain-like
1 1 SCOP 159635 Tex RuvX-like domain-like
1 1 SCOP 159720 mannose-1-phosphate guanylyl transferase
1 1 SCOP 159768 Phosphomethylpyrimidine kinase C-terminal domain-like
1 1 SCOP 159832 PBP transglycosylase domain-like
1 1 SCOP 160370 Ribosomal protein L10-like
1 1 SCOP 160883 CheD-like
1 1 SCOP 161071 SNF-like

The following families have one or more weak hits: